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Análise de uso de padrões de metadados em projetos de pesquisa e desenvolvimento na Embrapa Informática Agropecuária. Infoteca-e
MACÁRIO, C. G. N.; SPERANZA, E. A.; PIEROZZI JÚNIOR, I.; QUEIRÓS, L. R.; VISOLI, M. C.; HIGA, R. H.; MASSRUHÁ, S. M. F. S..
A Empresa Brasileira de Pesquisa Agropecuária (Embrapa) produz uma grande quantidade de dados como resultado das pesquisa que realiza. Os dados gerados abrangem diferentes domínios: solos, clima, coleções, dados de animais, dados bibliográficos, entre outros. Muitas vezes os projetos trocam ou reúsam a informação produzidas. Apesar disso, muitos deles ainda são armazenados de diferentes formas e usando diferentes formatos, como planilhas, sistemas de banco de dados, papel, entre outros. A necessidade ou possibilidade de integração/compartilhamento de informação entre esses sistemas ou mesmo com outras instituições de pesquisa, desencadeou ações para a incorporação de novas estruturas e conceitos aos sistemas desenvolvidos, no sentido de facilitar a...
Tipo: Boletim de Pesquisa e Desenvolvimento (INFOTECA-E) Palavras-chave: Metadados; Interoperabilidade; Padrões de metadados; Metadata; Interoperability; Metadata standard.
Ano: 2011 URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/920501
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Bioinformatics interoperability: all together now ! Naturalis
Meganck, B.; Mergen, P.; Meirte, D..
The following text presents some personal ideas about the way (bio)informatics2 is heading, along with some examples of how our institution – the Royal Museum for Central Africa (RMCA) – is gearing up for these new times ahead. It tries to find the important trends amongst the buzzwords, and to demonstrate how these will benefit the biological and scientific community. This text is based on a presentation given at the 7th Flora Malesiana Symposium in Leiden, The Netherlands, June 2007.
Tipo: Article / Letter to the editor Palavras-chave: Biodiversity informatics; Interoperability; Web 2.0.
Ano: 2009 URL: http://www.repository.naturalis.nl/record/524569
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Data Cataloguing ArchiMer
Quimbert, Erwann; Jeffery, Keith; Martens, Claudia; Martin, Paul; Zhao, Zhiming.
After a brief reminder on general concepts used in data cataloguing activities, this chapter provides information concerning the architecture and design recommendations for the implementation of catalogue systems for the ENVRIplus community. The main objective of this catalogue is to offer a unified discovery service allowing cross-disciplinary search and access to data collections coming from Research Infrastructures (RIs). This catalogue focuses on metadata with a coarse level of granularity. It was decided to offer metadata representing different types of dataset series. Only metadata for so-called flagship products (as defined by each community) are covered by the scope of this catalogue. The data collections remain within each RI. For RIs, the aim is...
Tipo: Text Palavras-chave: Catalogue; Metadata; Data; Interoperability; Standard; ISO; OGC; Format; Schema.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00642/75455/76273.pdf
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Evolving and Sustaining Ocean Best Practices and Standards for the Next Decade ArchiMer
Pearlman, Jay; Bushnell, Mark; Coppola, Laurent; Karstensen, Johannes; Buttigieg, Pier Luigi; Pearlman, Francoise; Simpsons, Pauline; Barbier, Michele; Muller-karger, Frank E.; Munoz-mas, Cristian; Pissierssens, Peter; Chandler, Cyndy; Hermes, Juliet; Heslop, Emma; Jenkyns, Reyna; Achterberg, Eric P.; Bensi, Manuel; Bittig, Henry C.; Blandin, Jerome; Bosch, Julie; Bourles, Bernard; Bozzano, Roberto; Buck, Justin J. H.; Burger, Eugene F.; Cano, Daniel; Cardin, Vanessa; Llorens, Miguel Charcos; Cianca, Andres; Chen, Hua; Cusack, Caroline; Delory, Eric; Garello, Rene; Giovanetti, Gabriele; Harscoat, Valerie; Hartman, Susan; Heitsenrether, Robert; Jirka, Simon; Lara-lopez, Ana; Lanteri, Nadine; Leadbetter, Adam; Manzella, Giuseppe; Maso, Joan; Mccurdy, Andrea; Moussat, Eric; Ntoumas, Manolis; Pensieri, Sara; Petihakis, George; Pinardi, Nadia; Pouliquen, Sylvie; Przeslawski, Rachel; Roden, Nicholas P.; Silke, Joe; Tamburri, Mario N.; Tang, Hairong; Tanhua, Toste; Telszewski, Maciej; Testor, Pierre; Thomas, Julie; Waldmann, Christoph; Whoriskey, Fred.
The oceans play a key role in global issues such as climate change, food security, and human health. Given their vast dimensions and internal complexity, efficient monitoring and predicting of the planet's ocean must be a collaborative effort of both regional and global scale. A first and foremost requirement for such collaborative ocean observing is the need to follow well-defined and reproducible methods across activities: from strategies for structuring observing systems, sensor deployment and usage, and the generation of data and information products, to ethical and governance aspects when executing ocean observing. To meet the urgent, planet-wide challenges we face, methods across all aspects of ocean observing should be broadly adopted by the ocean...
Tipo: Text Palavras-chave: Best practices; Sustainability; Interoperability; Digital repository; Peer review; Ocean observing; Ontologies; Methodologies.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00503/61423/65111.pdf
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Interoperability of Knowledge Units in Plant Protection: Case Studies AgEcon
Berankova, Martina; Houska, Milan; Kvasnicka, Roman.
In this work, we provide two case studies on interoperability and transfer of knowledge in the environment of a company dealing with plant protection. We find that the area of plant protection is highly oriented on working with knowledge. In this case interoperability of knowledge can play an important role in acquiring knowledge from different environments to solve specific problem in companies dealing with plant protection. Nevertheless, the concept of interoperability is well-developed on the level of data and information only. We stem from our previous works, where we defined a logical concept for the interoperability of knowledge on the level of knowledge units. The objective of this work is to show how to apply our process model of knowledge...
Tipo: Journal Article Palavras-chave: Interoperability; Knowledge transfer; Plant protection; Knowledge unit; Process model; Environmental Economics and Policy; Teaching/Communication/Extension/Profession; GA; IN.
Ano: 2010 URL: http://purl.umn.edu/99226
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Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards ArchiMer
Ten Hoopen, Petra; Pesant, Stephane; Kottmann, Renzo; Kopf, Anna; Bicak, Mesude; Claus, Simon; Deneudt, Klaas; Borremans, Catherine; Thijsse, Peter; Dekeyzer, Stefanie; Schaap, Dick M. A.; Bowler, Chris; Gloeckner, Frank Oliver; Cochrane, Guy.
Contextual data collected concurrently with molecular samples are critical to the use of metagenomics in the fields of marine biodiversity, bioinformatics and biotechnology. We present here Marine Microbial Biodiversity, Bioinformatics and Biotechnology (M2B3) standards for "Reporting" and "Serving" data. The M2B3 Reporting Standard (1) describes minimal mandatory and recommended contextual information for a marine microbial sample obtained in the epipelagic zone, (2) includes meaningful information for researchers in the oceanographic, biodiversity and molecular disciplines, and (3) can easily be adopted by any marine laboratory with minimum sampling resources. The M2B3 Service Standard defines a software interface through which these data can be...
Tipo: Text Palavras-chave: Data standard; Marine; Molecular; Biodiversity; Microbial; Bioinformatics; Reporting; Interoperability.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00311/42266/41588.pdf
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Ocean FAIR Data Services ArchiMer
Tanhua, Toste; Pouliquen, Sylvie; Hausman, Jessica; O’brien, Kevin; Bricher, Pip; De Bruin, Taco; Buck, Justin J. H.; Burger, Eugene F.; Carval, Thierry; Casey, Kenneth S.; Diggs, Steve; Giorgetti, Alessandra; Glaves, Helen; Harscoat, Valerie; Kinkade, Danie; Muelbert, Jose H.; Novellino, Antonio; Pfeil, Benjamin; Pulsifer, Peter L.; Van De Putte, Anton; Robinson, Erin; Schaap, Dick; Smirnov, Alexander; Smith, Neville; Snowden, Derrick; Spears, Tobias; Stall, Shelley; Tacoma, Marten; Thijsse, Peter; Tronstad, Stein; Vandenberghe, Thomas; Wengren, Micah; Wyborn, Lesley; Zhao, Zhiming.
Well-founded data management systems are of vital importance for ocean observing systems as they ensure that essential data are not only collected but also retained and made accessible for analysis and application by current and future users. Effective data management requires collaboration across activities including observations, metadata and data assembly, quality assurance and control (QA/QC), and data publication that enables local and interoperable discovery and access and secures archiving that guarantees long-term preservation. To achieve this, data should be findable, accessible, interoperable, and reusable (FAIR). Here, we outline how these principles apply to ocean data and illustrate them with a few examples. In recent decades, ocean data...
Tipo: Text Palavras-chave: FAIR; Ocean; Data management; Data services; Ocean observing; Standardization; Interoperability.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00509/62068/66248.pdf
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Species descriptions and digital environments: alternatives for accessibility of morphological data Rev. Bras. entomol.
Silva,Thiago Sanches Ranzani da.
Abstract Taxonomists' efforts throughout history provide significant amount of data that give support for establishing the specific identity of several groups of biological systems. In addition to identifying species, taxonomic research offers a wide range of biological information that can be used in other disciplines, e.g. evolution, ecology, integrated pest management. However, most of this information remains unappreciated due to certain aspects: (1) the advent of analytical tools have led to a shift in interest and investment in researches, focusing mainly in molecular studies; (2) the erroneous concept that the extensive data offered by taxonomic studies can be replaced by other datasets, separating it from its hypothesis-driven and investigative...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Data accessibility; Interoperability; Annotations; Web-based taxonomy.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262017000400277
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Streamlining Data and Service Centers for Easier Access to Data and Analytical Services: The Strategy of ODATIS as the Gateway to French Marine Data ArchiMer
Schmidt, Sabine; Maudire, Gilbert; Nys, Cecile; Sudre, Joel; Harscoat, Valerie; Dibarboure, Gérald; Huynh, Frédéric.
The past few decades have seen a marked acceleration in the amount of marine observation data derived using both in situ and remote sensing measurements. For example, high-frequency monitoring of key physical-chemical parameters has become an essential tool for assessing natural and human-induced changes in coastal waters as well as their consequences on society. The number and variety of data acquisition techniques require efficient methods of improving data availability. The challenge is to make ocean data available via interoperable portals, which facilitate data sharing according to Findable, Accessible, Interoperable, and Reusable (FAIR) principles for producers and users. Ocean DAta Information and Services (ODATIS) aims to become a unique gateway to...
Tipo: Text Palavras-chave: Ocean; Data repository; Interoperability; FAIR; Data and service center.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00667/77872/80019.pdf
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Web service to support decision-making for beef cattle production systems in Cárdenas- Tabasco, Mexico Acta Agron. (Palmira)
Sánchez-Díaz,Baltazar; Vargas-Villamil,Luis Manuel; Zavala-Cruz,Joel; Rivero-Bautista,Nydia del; González-Camacho,Juan Manuel; Crespo-Pichardo,Guillermo; Menéndez-Domínguez,Víctor Hugo.
Abstract The researchers propose a methodology to share, process, and exchange agricultural information among different applications through a Web service. The Web service will be available online and mobile and can be used as a tool for decision-making. Initially, agricultural regions and cartography of the study area were identified. Subsequently, a simulation model of potential yield of pasture and animal behavior by regions and area were designed, respectively. Finally, a Web service, using Amazon Web Services and REST for exchanging information, was developed. Web services in the cloud, enable interoperability using data, mapping information of agricultural regions, simulation models, and protocols for data transfer, thus making available the...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Agricultural regions; Cloud; Interoperability; Mobile; Simulation model.
Ano: 2017 URL: http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0120-28122017000100049
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